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LOC107985504 uncharacterized LOC107985504 [ Homo sapiens (human) ]

Gene ID: 107985504, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107985504
Gene description
uncharacterized LOC107985504
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 2.2), colon (RPKM 1.7) and 18 other tissues See more
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Genomic context

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See LOC107985504 in Genome Data Viewer
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (42775452..42776811, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (41163830..41165290, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44072695-44073416 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18529 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44081521-44082390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44086147-44086653 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44088149-44089095 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44089096-44090041 Neighboring gene phosphodiesterase 9A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44122945-44123824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44126986-44127486 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:44144061-44145260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44158941-44159941 Neighboring gene PDE9A antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44176879-44177378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44181049-44181582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44181583-44182114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44187499-44187998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44191023-44191524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44195549-44196050 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18530 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44197711-44198660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44199612-44200561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44201049-44201772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44202497-44203220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44203221-44203942 Neighboring gene long intergenic non-protein coding RNA 1668 Neighboring gene NANOG hESC enhancer GRCh37_chr21:44220991-44221572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44254625-44255576 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18531 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44268253-44268818 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44268819-44269384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44280271-44280829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44285917-44286612 Neighboring gene WD repeat domain 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44297711-44298674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44298675-44299639 Neighboring gene uncharacterized LOC105372817

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    42775452..42776811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755071.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    41163830..41165290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090201.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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