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LOC107985400 uncharacterized LOC107985400 [ Homo sapiens (human) ]

Gene ID: 107985400, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985400
Gene description
uncharacterized LOC107985400
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985400 in Genome Data Viewer
Location:
20p11.21-p11.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (25697041..25748142)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ZNF337 antisense RNA 1 Neighboring gene mediator complex subunit 28 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17673 Neighboring gene zinc finger protein 337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:25699573-25700088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:25700089-25700604 Neighboring gene vomeronasal 1 receptor 108 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17675 Neighboring gene uncharacterized LOC105372582 Neighboring gene family with sequence similarity 182 member B Neighboring gene BSND pseudogene 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000020.11 Chromosome 20 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    25697041..25748142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067557.1 RNA Sequence

  2. XR_007067556.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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