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LOC107984790 uncharacterized LOC107984790 [ Homo sapiens (human) ]

Gene ID: 107984790, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984790
Gene description
uncharacterized LOC107984790
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984790 in Genome Data Viewer
Location:
15q26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (99486718..99492759)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (97250478..97256562)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371017 Neighboring gene long intergenic non-protein coding RNA 2244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99942299-99942818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99942819-99943336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99944293-99944794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99949649-99950148 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6867 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:99973380-99974579 Neighboring gene long intergenic non-protein coding RNA 3080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99977262-99977931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99978603-99979271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100006923-100007424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100014529-100015205 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100015206-100015881 Neighboring gene Sharpr-MPRA regulatory region 6154 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6868 Neighboring gene uncharacterized LOC105371019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10159 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6869 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10160 Neighboring gene ribosomal protein L7 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    99486718..99492759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751711.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    97250478..97256562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085468.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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