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TRUB1 TruB pseudouridine synthase family member 1 [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107511723, updated on 30-Mar-2024

Summary

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Gene symbol
TRUB1
Gene description
TruB pseudouridine synthase family member 1
Locus tag
HJG63_019957
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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See TRUB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416309.1 (49808518..49839915)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494432.1 (1810795..1843932)

NW_023416309.1Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1 Neighboring gene 5S ribosomal RNA Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene bile salt sulfotransferase-like Neighboring gene uncharacterized LOC118603788

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA pseudouridine synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416309.1 Reference mRouAeg1.p

    Range
    49808518..49839915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016146406.2 → XP_016001892.2  probable tRNA pseudouridine synthase 1

    UniProtKB/TrEMBL
    A0A7J8GHV7, A0A7J8GHX1
    Conserved Domains (1) summary
    cd02867
    Location:93 → 361
    PseudoU_synth_TruB_4; Pseudouridine synthase homolog 4
Nucleotide Protein
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