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si:dkey-174m14.3 uncharacterized LOC107105232 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107105232, updated on 14-Mar-2024

Summary

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Gene symbol
si:dkey-174m14.3
Gene description
uncharacterized LOC107105232
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Also known as
sidkey
Orthologs
zebrafish all
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Genomic context

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See si:dkey-174m14.3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150490.1 (1080513..1116459)

NW_015150490.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin XIVb Neighboring gene 5'-nucleotidase, cytosolic IB b Neighboring gene interleukin-6 receptor subunit beta-like Neighboring gene retinol dehydrogenase 14b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150490.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of postsynaptic neurotransmitter receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brain-enriched guanylate kinase-associated protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150490.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    1080513..1116459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015405373.1 → XP_015260859.1  brain-enriched guanylate kinase-associated protein-like isoform X3

    UniProtKB/TrEMBL
    A0A3Q2FEY6
    Conserved Domains (1) summary
    cl23720
    Location:30 → 130
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_015405367.1 → XP_015260853.1  brain-enriched guanylate kinase-associated protein-like isoform X2

    UniProtKB/TrEMBL
    A0A3Q2FEY6
    Conserved Domains (1) summary
    pfam07795
    Location:12 → 90
    DUF1635; Protein of unknown function (DUF1635)

  3. XM_015405361.1 → XP_015260847.1  brain-enriched guanylate kinase-associated protein-like isoform X1

    UniProtKB/TrEMBL
    A0A3Q2FEY6
    Conserved Domains (1) summary
    cl23720
    Location:30 → 130
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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