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APOC1 apolipoprotein C1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 106994799, updated on 17-Aug-2024

Summary

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Official Symbol
APOC1provided by VGNC
Official Full Name
apolipoprotein C1provided by VGNC
Primary source
VGNC:VGNC:103787
See related
Ensembl:ENSMMUG00000028749
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
APOC1B; Apo-CIB; ApoC-IB
Orthologs
human mouse all
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Genomic context

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See APOC1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (44952532..44957687)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (40222722..40226975)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 40 Neighboring gene apolipoprotein E Neighboring gene apolipoprotein C-I, acidic form Neighboring gene apolipoprotein C4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipoprotein lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein C-I, basic form
Names
Apolipoprotein C-I, basic form
Apolipoprotein C1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    44952532..44957687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028839204.1 → XP_028695037.1  apolipoprotein C-I, basic form isoform X2

    UniProtKB/Swiss-Prot
    H9FNA4
    Related
    ENSMMUP00000031571.3, ENSMMUT00000038471.3
    Conserved Domains (1) summary
    pfam04691
    Location:27 → 81
    ApoC-I; Apolipoprotein C-I (ApoC-1)

  2. XM_028839203.1 → XP_028695036.1  apolipoprotein C-I, basic form isoform X1

    Conserved Domains (1) summary
    pfam04691
    Location:31 → 85
    ApoC-I; Apolipoprotein C-I (ApoC-1)

  3. XM_015124242.2 → XP_014979728.1  apolipoprotein C-I, basic form isoform X2

    UniProtKB/Swiss-Prot
    H9FNA4
    Conserved Domains (1) summary
    pfam04691
    Location:27 → 81
    ApoC-I; Apolipoprotein C-I (ApoC-1)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H9FNA4.1 GenPept UniProtKB/Swiss-Prot:H9FNA4

Gene LinkOut

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