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CCNF cyclin F [ Calidris pugnax (ruff) ]

Gene ID: 106897864, updated on 3-Aug-2024

Summary

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Gene symbol
CCNF
Gene description
cyclin F
See related
Ensembl:ENSCPUG00000010940
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See CCNF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091141.1 (695068..709700, complement)

NW_015091141.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 3 Neighboring gene VRK serine/threonine kinase 3 Neighboring gene tubulin epsilon and delta complex 2 Neighboring gene ankyrin repeat and fibronectin type-III domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015091141.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle phase transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015091141.1 Reference ASM143184v1

    Range
    695068..709700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014958808.1 → XP_014814294.1  cyclin-F isoform X2

    Related
    ENSCPUP00000015742.1, ENSCPUT00000018682.1
    Conserved Domains (3) summary
    smart00256
    Location:34 → 72
    FBOX; A Receptor for Ubiquitination Targets
    pfam00134
    Location:298 → 405
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:420 → 524
    Cyclin_C; Cyclin, C-terminal domain

  2. XM_014958807.1 → XP_014814293.1  cyclin-F isoform X1

    Conserved Domains (3) summary
    smart00256
    Location:59 → 97
    FBOX; A Receptor for Ubiquitination Targets
    pfam00134
    Location:323 → 430
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:445 → 549
    Cyclin_C; Cyclin, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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