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LOC106681155 superoxide dismutase [Cu-Zn] [ Halyomorpha halys (brown marmorated stink bug) ]

Gene ID: 106681155, updated on 7-Aug-2024

Summary

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Gene symbol
LOC106681155
Gene description
superoxide dismutase [Cu-Zn]
See related
EnsemblRapid:LOC106681155
Gene type
protein coding
RefSeq status
MODEL
Organism
Halyomorpha halys
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha
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Genomic context

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See LOC106681155 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_07 current Hhal_1.1 (GCF_000696795.3) Unplaced Scaffold NW_027105402.1 (125861..204614)
100 previous assembly Hhal_1.0 (GCF_000696795.1) Unplaced Scaffold NW_014466728.1 (125911..204174)

NW_027105402.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106681158 Neighboring gene tetratricopeptide repeat protein 5 Neighboring gene dynein axonemal light chain 4 Neighboring gene cold shock domain-containing protein CG9705

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome of the invasive brown marmorated stink bug, Halyomorpha halys (Stål) (Heteroptera: Pentatomidae). Sparks ME, et al. PLoS One, 2014. PMID 25386688, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000696795.3-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hhal_1.1 Primary Assembly

Genomic

  1. NW_027105402.1 Reference Hhal_1.1 Primary Assembly

    Range
    125861..204614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067050911.1 → XP_066907012.1  superoxide dismutase [Cu-Zn] isoform X2

  2. XM_014421327.3 → XP_014276813.1  superoxide dismutase [Cu-Zn] isoform X1

    Related
    XP_014276813.1
    Conserved Domains (1) summary
    cd00305
    Location:70 → 209
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
Nucleotide Protein
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