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RNU6-258P RNA, U6 small nuclear 258, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481259, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-258Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 258, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47221
See related
Ensembl:ENSG00000212186 AllianceGenome:HGNC:47221
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-258P in Genome Data Viewer
Location:
17p11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20126388..20126488, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20075060..20075160, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20029701..20029801, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene uncharacterized LOC100131943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11865 Neighboring gene Sharpr-MPRA regulatory region 535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11868 Neighboring gene Sharpr-MPRA regulatory region 1687 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20026257-20026482 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20039526-20039742 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20046676-20047184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8308 Neighboring gene Sharpr-MPRA regulatory region 374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20135138-20135638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20184836-20185336 Neighboring gene RNA, U6 small nuclear 1057, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20218551-20219051 Neighboring gene coiled-coil domain containing 144C, pseudogene Neighboring gene RNA, U6 small nuclear 467, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043771.1 

    Range
    101..201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20126388..20126488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20075060..20075160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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