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Macs1 mammal amphibian conserved sequence 1 [ Mus musculus (house mouse) ]

Gene ID: 106050035, updated on 9-Aug-2024

Summary

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Gene symbol
Macs1
Gene description
mammal amphibian conserved sequence 1
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366632
Summary
This region contains a highly conserved sequence that functions as an enhancer in the lung-gut epithelium. This sequence may regulate expression of the sonic hedgehog (Shh) gene, located approximately 750 kb downstream. [provided by RefSeq, Sep 2016]
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Genomic context

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See Macs1 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (29416996..29417802)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (29211998..29212804)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35688 Neighboring gene Shh brain enhancer 3 Neighboring gene STARR-seq mESC enhancer starr_12726 Neighboring gene predicted gene, 35881 Neighboring gene STARR-seq mESC enhancer starr_12727 Neighboring gene mammal reptile conserved sequence 1 Neighboring gene STARR-seq mESC enhancer starr_12728 Neighboring gene mammal fish conserved sequence 3 Neighboring gene STARR-seq mESC enhancer starr_12729 Neighboring gene mammal fish conserved sequence 4 Neighboring gene ring finger protein 32 Neighboring gene predicted gene 7420 Neighboring gene limb region 1 Neighboring gene STARR-seq mESC enhancer starr_12732 Neighboring gene STARR-seq mESC enhancer starr_12733 Neighboring gene STARR-seq mESC enhancer starr_12734 Neighboring gene zone of polarising activity regulatory sequence 1 Neighboring gene STARR-positive B cell enhancer ABC_E9634 Neighboring gene predicted gene, 36086

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel regulatory element for Shh expression in the lung and gut of mouse embryos. Tsukiji N, et al. Mech Dev, 2014 Feb. PMID 24157522
  2. Long range regulation of the sonic hedgehog gene. Anderson E, et al. Curr Opin Genet Dev, 2014 Aug. PMID 24859115
  3. Mapping the Shh long-range regulatory domain. Anderson E, et al. Development, 2014 Oct. PMID 25252942, Free PMC Article
  4. A cluster of three long-range enhancers directs regional Shh expression in the epithelial linings. Sagai T, et al. Development, 2009 May. PMID 19369396

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 366632

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042261.1 

    Range
    101..907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    29416996..29417802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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