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LOC105379122 uncharacterized LOC105379122 [ Homo sapiens (human) ]

Gene ID: 105379122, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105379122
Gene description
uncharacterized LOC105379122
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105379122 in Genome Data Viewer
Location:
5q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (111826769..111845362)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (112337097..112355690)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene STARD4 antisense RNA 1 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 13 Neighboring gene RN7SK pseudogene 57 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:111092091-111092648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16234 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16235 Neighboring gene neuronal regeneration related protein Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 14 Neighboring gene NREP antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:111326855-111327356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:111327357-111327856 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:111333199-111334398

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    111826769..111845362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058900.1 RNA Sequence

  2. XR_948673.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    112337097..112355690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075867.1 RNA Sequence

  2. XR_007075866.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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