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LOC105378797 uncharacterized LOC105378797 [ Homo sapiens (human) ]

Gene ID: 105378797, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105378797
Gene description
uncharacterized LOC105378797
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378797 in Genome Data Viewer
Location:
1p31.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (72282934..72679424)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (72161920..72504284)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene neuronal growth regulator 1 Neighboring gene NEGR1 intronic transcript 1 Neighboring gene NANOG hESC enhancer GRCh37_chr1:72328413-72328914 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:72466099-72467298 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 993 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:72750040-72751239 Neighboring gene ribosomal protein L31 pseudogene 12 Neighboring gene GDP dissociation inhibitor 2 pseudogene 2 Neighboring gene uncharacterized LOC105378796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:73113838-73114818 Neighboring gene uncharacterized LOC105378798 Neighboring gene RNA, U6 small nuclear 1246, pseudogene Neighboring gene long intergenic non-protein coding RNA 2796

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    72282934..72679424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737670.2 RNA Sequence

  2. XR_947505.3 RNA Sequence

  3. XR_001737671.3 RNA Sequence

  4. XR_947506.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    72161920..72504284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070344.1 RNA Sequence

  2. XR_007070342.1 RNA Sequence

  3. XR_007070341.1 RNA Sequence

  4. XR_007070343.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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