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LOC105378694 uncharacterized LOC105378694 [ Homo sapiens (human) ]

Gene ID: 105378694, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105378694
Gene description
uncharacterized LOC105378694
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378694 in Genome Data Viewer
Location:
1p34.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (45867884..45909234, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (45745082..45786442, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 835 Neighboring gene ribosomal protein L6 pseudogene 1 Neighboring gene MPRA-validated peak201 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:46304499-46305000 Neighboring gene microtubule associated serine/threonine kinase 2 Neighboring gene Sharpr-MPRA regulatory region 10352 Neighboring gene translation machinery associated 16 homolog pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 5403 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:46392868-46393561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:46406659-46407160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:46407161-46407660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 836 Neighboring gene MPRA-validated peak202 silencer Neighboring gene P3R3URF-PIK3R3 readthrough Neighboring gene OCT4 hESC enhancer GRCh37_chr1:46502635-46503136 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:46508718-46509562 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:46509563-46510406 Neighboring gene uncharacterized LOC124904171 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:46527714-46528913 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 990 Neighboring gene phosphoinositide-3-kinase regulatory subunit 3 Neighboring gene COX7B pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    45867884..45909234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738038.2 RNA Sequence

  2. XR_001738037.3 RNA Sequence

  3. XR_007066060.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    45745082..45786442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070150.1 RNA Sequence

  2. XR_007070152.1 RNA Sequence

  3. XR_007070151.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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