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LOC105378598 uncharacterized LOC105378598 [ Homo sapiens (human) ]

Gene ID: 105378598, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105378598
Gene description
uncharacterized LOC105378598
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.2), lung (RPKM 0.3) and 2 other tissues See more
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Genomic context

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See LOC105378598 in Genome Data Viewer
Location:
1p36.32
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (2767828..2784745)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (2270847..2284476)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 34 Neighboring gene uncharacterized LOC112268220 Neighboring gene uncharacterized LOC107985732 Neighboring gene uncharacterized LOC105378600 Neighboring gene uncharacterized LOC107984904 Neighboring gene uncharacterized LOC105378599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2706849-2707508 Neighboring gene uncharacterized LOC124903826 Neighboring gene uncharacterized LOC124903825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2766741-2767242 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:2824551-2825750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2837727-2838286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 57 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2931349-2932112 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6546 Neighboring gene actin related protein T2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    2767828..2784745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007065371.1 RNA Sequence

  2. XR_007065370.1 RNA Sequence

  3. XR_007065372.1 RNA Sequence

  4. XR_007065367.1 RNA Sequence

  5. XR_007065363.1 RNA Sequence

  6. XR_007065364.1 RNA Sequence

  7. XR_007065380.1 RNA Sequence

  8. XR_007065379.1 RNA Sequence

  9. XR_007065378.1 RNA Sequence

  10. XR_007065377.1 RNA Sequence

  11. XR_007065368.1 RNA Sequence

  12. XR_007065366.1 RNA Sequence

  13. XR_946844.1 RNA Sequence

  14. XR_946846.1 RNA Sequence

  15. XR_007065365.1 RNA Sequence

  16. XR_007065376.1 RNA Sequence

  17. XR_007065375.1 RNA Sequence

  18. XR_007065374.1 RNA Sequence

  19. XR_007065369.1 RNA Sequence

  20. XR_007065373.1 RNA Sequence

  21. XR_946858.1 RNA Sequence

  22. XR_946859.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187515.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    331002..341941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068590.1 RNA Sequence

  2. XR_007068589.1 RNA Sequence

  3. XR_007068586.1 RNA Sequence

  4. XR_007068582.1 RNA Sequence

  5. XR_007068583.1 RNA Sequence

  6. XR_007068598.1 RNA Sequence

  7. XR_007068597.1 RNA Sequence

  8. XR_007068596.1 RNA Sequence

  9. XR_007068595.1 RNA Sequence

  10. XR_007068587.1 RNA Sequence

  11. XR_007068585.1 RNA Sequence

  12. XR_951576.1 RNA Sequence

  13. XR_951577.1 RNA Sequence

  14. XR_007068584.1 RNA Sequence

  15. XR_007068594.1 RNA Sequence

  16. XR_007068593.1 RNA Sequence

  17. XR_007068592.1 RNA Sequence

  18. XR_007068588.1 RNA Sequence

  19. XR_007068591.1 RNA Sequence

  20. XR_951590.1 RNA Sequence

  21. XR_951593.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    2270847..2284476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069762.1 RNA Sequence

  2. XR_007069761.1 RNA Sequence

  3. XR_007069763.1 RNA Sequence

  4. XR_007069756.1 RNA Sequence

  5. XR_007069759.1 RNA Sequence

  6. XR_007069753.1 RNA Sequence

  7. XR_007069754.1 RNA Sequence

  8. XR_007069767.1 RNA Sequence

  9. XR_007069768.1 RNA Sequence

  10. XR_007069766.1 RNA Sequence

  11. XR_007069765.1 RNA Sequence

  12. XR_007069760.1 RNA Sequence

  13. XR_007069758.1 RNA Sequence

  14. XR_007069757.1 RNA Sequence

  15. XR_007069755.1 RNA Sequence

  16. XR_007069764.1 RNA Sequence

Nucleotide Protein
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