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LOC105378239 uncharacterized LOC105378239 [ Homo sapiens (human) ]

Gene ID: 105378239, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105378239
Gene description
uncharacterized LOC105378239
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378239 in Genome Data Viewer
Location:
5q33.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (155115732..155119567)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (155650396..155653511)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11709 Neighboring gene NANOG hESC enhancer GRCh37_chr5:154428817-154429318 Neighboring gene kinesin family member 4B Neighboring gene ReSE screen-validated silencer GRCh37_chr5:154519696-154519853 Neighboring gene ribosomal protein L6 pseudogene 32 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:154653816-154654435 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:154692427-154693626 Neighboring gene STN1, CST complex subunit pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:154854779-154855390 Neighboring gene peptidylprolyl isomerase G pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    155115732..155119567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742940.2 RNA Sequence

  2. XR_944435.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    155650396..155653511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076033.1 RNA Sequence

  2. XR_007076034.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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