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LOC105377874 uncharacterized LOC105377874 [ Homo sapiens (human) ]

Gene ID: 105377874, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105377874
Gene description
uncharacterized LOC105377874
See related
Ensembl:ENSG00000310130
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377874 in Genome Data Viewer
Location:
6q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (82271438..82272690)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (83490875..83492126)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene RNA, U6 small nuclear 130, pseudogene Neighboring gene MPRA-validated peak5922 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr6:82949825-82950342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17353 Neighboring gene single stranded DNA binding protein 2 pseudogene Neighboring gene Sharpr-MPRA regulatory region 1235 Neighboring gene MPRA-validated peak5923 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24777 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:82999144-82999335 Neighboring gene uncharacterized LOC105377875 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:83072967-83073480 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:83073481-83073992 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:83074144-83075046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:83075047-83075948 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24779 Neighboring gene trophoblast glycoprotein Neighboring gene uncharacterized LOC124901352

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    82271438..82272690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_942737.3 RNA Sequence

    Related
    ENST00000847423.1

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_013171802.1 Reference GRCh38.p14 PATCHES

    Range
    141253..142502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756931.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    83490875..83492126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076936.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials