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LOC105377782 uncharacterized LOC105377782 [ Homo sapiens (human) ]

Gene ID: 105377782, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377782
Gene description
uncharacterized LOC105377782
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377782 in Genome Data Viewer
Location:
8p23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (2203339..2206182)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (1981629..1989632)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene myomesin 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:2049318-2050517 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:2053383-2054582 Neighboring gene microRNA 7160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2084289-2084796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2085784-2086284 Neighboring gene uncharacterized LOC105377781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2128908-2129408 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2130059-2130239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2177015-2177515 Neighboring gene uncharacterized LOC105377783 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2198229-2199013 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2199014-2199799 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2204711-2204884 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:2206168-2207367 duplicate 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2212147-2212701 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:2224809-2224986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:2230117-2230734 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:2231642-2232172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:2244841-2245340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2282596-2283334 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:2283335-2284073 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:2206168-2207367 duplicate 2 Neighboring gene uncharacterized LOC105377784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General gene information

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Clone Names

  • FLJ34356

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    2203339..2206182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_941357.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187576.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    380950..389035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_951769.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    1981629..1989632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078622.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials