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LOC105377164 uncharacterized LOC105377164 [ Homo sapiens (human) ]

Gene ID: 105377164, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105377164
Gene description
uncharacterized LOC105377164
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377164 in Genome Data Viewer
Location:
3p13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (73678260..73707023, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (73719769..73748548, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene PDZ domain containing ring finger 3 Neighboring gene PDZRN3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73697351-73697852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73697853-73698352 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71107 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71127 Neighboring gene PRDX5 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2005 Neighboring gene NANOG hESC enhancer GRCh37_chr3:73923797-73924298 Neighboring gene long intergenic non-protein coding RNA 2047

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    73678260..73707023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740755.1 RNA Sequence

  2. XR_940966.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    73719769..73748548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073132.1 RNA Sequence

  2. XR_007073131.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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