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LOC105376041 uncharacterized LOC105376041 [ Homo sapiens (human) ]

Gene ID: 105376041, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376041
Gene description
uncharacterized LOC105376041
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.2) and thyroid (RPKM 0.7) See more
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Genomic context

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See LOC105376041 in Genome Data Viewer
Location:
9p13.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (38424611..38477489)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (38448791..38501667)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28415 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28416 Neighboring gene aldehyde dehydrogenase 1 family member B1 Neighboring gene insulin like growth factor binding protein like 1 Neighboring gene VISTA enhancer hs1390 Neighboring gene Sharpr-MPRA regulatory region 10144 Neighboring gene armadillo repeat containing 8 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38483125-38483742 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:38483743-38484358 Neighboring gene transcription elongation factor A1 pseudogene 3 Neighboring gene growth arrest specific 2 like 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    38424611..38477489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061486.1 RNA Sequence

  2. XR_007061487.1 RNA Sequence

  3. XR_007061485.1 RNA Sequence

  4. XR_007061484.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    38448791..38501667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080340.1 RNA Sequence

  2. XR_007080341.1 RNA Sequence

  3. XR_007080339.1 RNA Sequence

  4. XR_007080338.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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