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LOC105373172 uncharacterized LOC105373172 [ Homo sapiens (human) ]

Gene ID: 105373172, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373172
Gene description
uncharacterized LOC105373172
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373172 in Genome Data Viewer
Location:
1q42.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (232042641..232058744)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (231428180..231444288)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TSNAX-DISC1 readthrough (NMD candidate) Neighboring gene DISC1 scaffold protein Neighboring gene DISC1 intronic transcript 1 Neighboring gene uncharacterized LOC124904549 Neighboring gene NANOG hESC enhancer GRCh37_chr1:232173754-232174300 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:232179763-232180962 Neighboring gene uncharacterized LOC105373171 Neighboring gene MPRA-validated peak768 silencer Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232253543-232254348 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:232258103-232258756 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:232258757-232259410 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:232259411-232260064 Neighboring gene NANOG hESC enhancer GRCh37_chr1:232268265-232268826 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:232302616-232303191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232315987-232316617 Neighboring gene RNA, 7SL, cytoplasmic 299, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    232042641..232058744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738523.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    231428180..231444288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071185.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials