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LOC105372522 uncharacterized LOC105372522 [ Homo sapiens (human) ]

Gene ID: 105372522, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105372522
Gene description
uncharacterized LOC105372522
See related
Ensembl:ENSG00000182621
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372522 in Genome Data Viewer
Location:
20p12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (8962199..8968360)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (9005352..9012157)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene phospholipase C beta 1 Neighboring gene uncharacterized LOC105372521 Neighboring gene Sharpr-MPRA regulatory region 15406 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12669 Neighboring gene Sharpr-MPRA regulatory region 2883 Neighboring gene RNA, U105B small nucleolar Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:8917332-8917836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:8917837-8918339 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:9031646-9032845 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:9055836-9056336 Neighboring gene Sharpr-MPRA regulatory region 7247 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:9160877-9161492 Neighboring gene phospholipase C beta 4 Neighboring gene MPRA-validated peak4143 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17537 Neighboring gene LAMP5 antisense RNA 1 Neighboring gene lysosomal associated membrane protein family member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    8962199..8968360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754742.2 RNA Sequence

    Related
    ENST00000637273.1

  2. XR_001754736.2 RNA Sequence

  3. XR_001754739.2 RNA Sequence

  4. XR_937244.3 RNA Sequence

  5. XR_007067524.1 RNA Sequence

  6. XR_007067526.1 RNA Sequence

  7. XR_007067528.1 RNA Sequence

  8. XR_007067525.1 RNA Sequence

  9. XR_007067523.1 RNA Sequence

  10. XR_007067527.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    9005352..9012157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089840.1 RNA Sequence

  2. XR_007089842.1 RNA Sequence

  3. XR_007089844.1 RNA Sequence

  4. XR_007089846.1 RNA Sequence

  5. XR_007089839.1 RNA Sequence

  6. XR_007089843.1 RNA Sequence

  7. XR_007089847.1 RNA Sequence

  8. XR_007089841.1 RNA Sequence

  9. XR_007089838.1 RNA Sequence

  10. XR_007089845.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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