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LOC105372190 uncharacterized LOC105372190 [ Homo sapiens (human) ]

Gene ID: 105372190, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105372190
Gene description
uncharacterized LOC105372190
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372190 in Genome Data Viewer
Location:
18q22.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (73378367..73691291, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (73599772..73912387, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2864 Neighboring gene Sharpr-MPRA regulatory region 3365 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:70912438-70913029 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:70916635-70917834 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:70926050-70926267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:70931223-70931724 Neighboring gene chr18 t(4;18)(q35;q18) HERV-H recombination region Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49950 Neighboring gene long intergenic non-protein coding RNA 2582 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49980 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:71098754-71099424 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49987 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50021 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:71230790-71231989 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:71358526-71359026 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:71359027-71359527 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:71362654-71363853 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:71382077-71383276 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:71384186-71385385 Neighboring gene uncharacterized LOC105372191 Neighboring gene RNA, 7SL, cytoplasmic 401, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    73378367..73691291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066468.1 RNA Sequence

  2. XR_007066469.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    73599772..73912387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088553.1 RNA Sequence

  2. XR_007088554.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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