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LOC105371954 uncharacterized LOC105371954 [ Homo sapiens (human) ]

Gene ID: 105371954, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371954
Gene description
uncharacterized LOC105371954
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00470
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371954 in Genome Data Viewer
Location:
18p11.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (1363630..1392709, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (1518127..1561734, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371953 Neighboring gene Sharpr-MPRA regulatory region 5202 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:1208318-1209041 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 3 Neighboring gene MPRA-validated peak3040 silencer Neighboring gene long intergenic non-protein coding RNA 470 Neighboring gene RN7SK pseudogene 72 Neighboring gene ATPase family AAA domain containing 1 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr18:1369016-1369234 Neighboring gene uncharacterized LOC105371960 Neighboring gene Sharpr-MPRA regulatory region 5473 Neighboring gene uncharacterized LOC105371959

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    1363630..1392709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066438.1 RNA Sequence

  2. XR_007066437.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    1518127..1561734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088303.1 RNA Sequence

  2. XR_007088304.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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