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LOC105371466 uncharacterized LOC105371466 [ Homo sapiens (human) ]

Gene ID: 105371466, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371466
Gene description
uncharacterized LOC105371466
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.2), brain (RPKM 0.3) and 8 other tissues See more
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Genomic context

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See LOC105371466 in Genome Data Viewer
Location:
1q23.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (160377415..160408255, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (159514487..159545256, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:160312973-160313920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1920 Neighboring gene nicastrin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1921 Neighboring gene nescient helix-loop-helix 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1922 Neighboring gene RNA, U4 small nuclear 42, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:160379091-160379966 Neighboring gene Sharpr-MPRA regulatory region 8449 Neighboring gene VANGL planar cell polarity protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1923 Neighboring gene uncharacterized LOC105371467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1924 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1927 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1928 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:160460168-160461367 Neighboring gene SLAM family member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1929

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    160377415..160408255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066686.1 RNA Sequence

  2. XR_007066685.1 RNA Sequence

  3. XR_922199.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    159514487..159545256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070786.1 RNA Sequence

  2. XR_007070785.1 RNA Sequence

  3. XR_007070784.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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