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LOC105370531 LINE-1 retrotransposable element ORF1 protein-like [ Homo sapiens (human) ]

Gene ID: 105370531, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105370531
Gene description
LINE-1 retrotransposable element ORF1 protein-like
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 2.0), testis (RPKM 1.3) and 25 other tissues See more
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Genomic context

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See LOC105370531 in Genome Data Viewer
Location:
14q23.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (63119600..63177709, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (57327227..57385061, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATP synthase F1 subunit alpha pseudogene 4 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:63102949-63103450 Neighboring gene Sharpr-MPRA regulatory region 7830 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_34896 Neighboring gene potassium voltage-gated channel subfamily H member 5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:63248008-63248579 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_34948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:63511437-63511940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:63511941-63512444 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:63527728-63528286 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:63632890-63633551 Neighboring gene poly(ADP-ribose) polymerase 1 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:63640011-63640186 Neighboring gene uncharacterized LOC105370530 Neighboring gene ras homolog family member J

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    63119600..63177709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943934.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    57327227..57385061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084824.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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