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LINC02406 long intergenic non-protein coding RNA 2406 [ Homo sapiens (human) ]

Gene ID: 105369730, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02406provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2406provided by HGNC
Primary source
HGNC:HGNC:53334
See related
Ensembl:ENSG00000258144 AllianceGenome:HGNC:53334
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02406 in Genome Data Viewer
Location:
12q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (39087711..39145470, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (39037583..39095326, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (39481513..39539272, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene sucrase-isomaltase (alpha-glucosidase) pseudogene Neighboring gene uncharacterized LOC107984484 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:39456016-39456953 Neighboring gene NANOG hESC enhancer GRCh37_chr12:39523406-39523907 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:39584065-39584264 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:39671001-39672200 Neighboring gene uncharacterized LOC101927019 Neighboring gene kinesin family member 21A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6198 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:39787553-39788229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6199 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:39805818-39806556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:39836751-39837251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6201 Neighboring gene uncharacterized LOC124902919

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183477.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018448, AC084373

  2. NR_183478.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018448
    Related
    ENST00000668449.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    39087711..39145470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    39037583..39095326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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