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LINC02739 long intergenic non-protein coding RNA 2739 [ Homo sapiens (human) ]

Gene ID: 105369317, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02739provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2739provided by HGNC
Primary source
HGNC:HGNC:54256
See related
Ensembl:ENSG00000255008 AllianceGenome:HGNC:54256
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translation. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in testis (RPKM 1.2), ovary (RPKM 0.5) and 15 other tissues See more
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Genomic context

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See LINC02739 in Genome Data Viewer
Location:
11q12.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (59560298..59566130, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (59511221..59517053, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (59327771..59333603, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3365 Neighboring gene tRNA-Phe (anticodon GAA) 1-3 Neighboring gene tRNA-Lys (anticodon TTT) 3-4 Neighboring gene RNA, U7 small nuclear 58 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:59332897-59333398 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:59333399-59333898 Neighboring gene tRNA-Phe (anticodon GAA) 2-1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:59343523-59344722 Neighboring gene oxysterol binding protein Neighboring gene microRNA 3162

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • AP000442.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187289.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000442
    Related
    ENST00000785247.1

  2. NR_187290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000442
    Related
    ENST00000661408.1

  3. NR_187291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000442

  4. NR_187292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000442

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    59560298..59566130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    59511221..59517053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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