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LRRC19 leucine rich repeat containing 19 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105308733, updated on 30-Mar-2024

Summary

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Gene symbol
LRRC19
Gene description
leucine rich repeat containing 19
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See LRRC19 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889400.1 (630102..636129)

NW_011889400.1Genomic Context describing neighboring genes Neighboring gene TEK receptor tyrosine kinase Neighboring gene 5S ribosomal RNA Neighboring gene intraflagellar transport 74 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene phospholipase A2 activating protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889400 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in interleukin-8 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889400.1 Reference Pvam_2.0

    Range
    630102..636129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023525745.1 → XP_023381513.1  leucine-rich repeat-containing protein 19

    UniProtKB/TrEMBL
    A0A6P6C284
    Conserved Domains (4) summary
    smart00082
    Location:176 → 227
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:49 → 74
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:75 → 133
    LRR_8; Leucine rich repeat
    pfam15176
    Location:256 → 370
    LRR19-TM; Leucine-rich repeat family 19 TM domain
Nucleotide Protein
Heading Accession and Version

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