U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm40264 predicted gene, 40264 [ Mus musculus (house mouse) ]

Gene ID: 105244705, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Gm40264provided by MGI
Official Full Name
predicted gene, 40264provided by MGI
Primary source
MGI:MGI:5623149
See related
AllianceGenome:MGI:5623149
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
lnc-; lnc-Crot
Summary
Is expressed in several structures, including brain; ganglia; gut; liver; and spleen. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in liver adult (RPKM 1.3), kidney adult (RPKM 0.3) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gm40264 in Genome Data Viewer
Location:
5 A1; 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (9084746..9088592)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (9034746..9038592)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B member 4 Neighboring gene STARR-positive B cell enhancer ABC_E6299 Neighboring gene predicted gene, 31388 Neighboring gene STARR-seq mESC enhancer starr_12400 Neighboring gene coiled-coil domain-containing protein 72 pseudogene Neighboring gene carnitine O-octanoyltransferase Neighboring gene STARR-positive B cell enhancer mm9_chr5:8997064-8997365 Neighboring gene STARR-seq mESC enhancer starr_12401 Neighboring gene STARR-seq mESC enhancer starr_12402 Neighboring gene STARR-seq mESC enhancer starr_12403 Neighboring gene STARR-seq mESC enhancer starr_12404 Neighboring gene STARR-seq mESC enhancer starr_12405 Neighboring gene STARR-seq mESC enhancer starr_12406 Neighboring gene transmembrane protein 243, mitochondrial Neighboring gene cyclin D binding myb like transcription factor 1 Neighboring gene predicted gene, 46901

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. Fan Z, et al. Nucleic Acids Res, 2017 Jun 2. PMID 28335007, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    9084746..9088592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_868240.1 RNA Sequence

  2. XR_868241.1 RNA Sequence

  3. XR_868242.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Research Materials