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Gm39941 predicted gene, 39941 [ Mus musculus (house mouse) ]

Gene ID: 105244306, updated on 17-Aug-2024

Summary

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Official Symbol
Gm39941provided by MGI
Official Full Name
predicted gene, 39941provided by MGI
Primary source
MGI:MGI:5622826
See related
AllianceGenome:MGI:5622826
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm39941 in Genome Data Viewer
Location:
2 F3; 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (134759439..134782711)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (134917519..134940791)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05771 Neighboring gene zinc finger, AN1-type domain 1 pseudogene Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene phospholipase C, beta 1 Neighboring gene STARR-seq mESC enhancer starr_05772 Neighboring gene STARR-seq mESC enhancer starr_05773 Neighboring gene STARR-seq mESC enhancer starr_05774 Neighboring gene STARR-seq mESC enhancer starr_05775 Neighboring gene RIKEN cDNA 4930545L23 gene Neighboring gene STARR-seq mESC enhancer starr_05777 Neighboring gene STARR-seq mESC enhancer starr_05778 Neighboring gene STARR-seq mESC enhancer starr_05779 Neighboring gene predicted gene, 31993

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    134759439..134782711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_866761.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials