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Gm39774 predicted gene, 39774 [ Mus musculus (house mouse) ]

Gene ID: 105244100, updated on 27-Nov-2024

Summary

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Official Symbol
Gm39774provided by MGI
Official Full Name
predicted gene, 39774provided by MGI
Primary source
MGI:MGI:5622659
See related
Ensembl:ENSMUSG00000134365 AllianceGenome:MGI:5622659
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LCN17
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm39774 in Genome Data Viewer
Location:
2 A3; 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (26672167..26677275, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (26782155..26787263, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene calcyclin binding protein pseudogene Neighboring gene predicted gene, 39773 Neighboring gene ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase Neighboring gene STARR-seq mESC enhancer starr_03995 Neighboring gene STARR-seq mESC enhancer starr_03996 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:26758332-26758621 Neighboring gene surfeit gene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The olfactory transcriptomes of mice. Ibarra-Soria X, et al. PLoS Genet, 2014 Sep. PMID 25187969, Free PMC Article
  2. Update on the human and mouse lipocalin (LCN) gene family, including evidence the mouse Mup cluster is result of an "evolutionary bloom". Charkoftaki G, et al. Hum Genomics, 2019 Feb 19. PMID 30782214, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC105244100
Names
lipocalin 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001359165.1 → NP_001346094.1  uncharacterized protein LOC105244100

    Status: VALIDATED

    Source sequence(s)
    AL732311, KJ004570
    UniProtKB/TrEMBL
    W8QK46
    Related
    ENSMUST00000324119.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    26672167..26677275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials