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Gm39538 predicted gene, 39538 [ Mus musculus (house mouse) ]

Gene ID: 105243725, updated on 22-Oct-2024

Summary

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Official Symbol
Gm39538provided by MGI
Official Full Name
predicted gene, 39538provided by MGI
Primary source
MGI:MGI:5622423
See related
Ensembl:ENSMUSG00000129265 AllianceGenome:MGI:5622423
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm39538 in Genome Data Viewer
Location:
X F1; X
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (139422314..139436409, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (140521565..140534432, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene FERM and PDZ domain containing 3 Neighboring gene predicted gene, 32113 Neighboring gene STARR-seq mESC enhancer starr_48003 Neighboring gene microRNA 3475 Neighboring gene STARR-seq mESC enhancer starr_48004 Neighboring gene STARR-seq mESC enhancer starr_48005 Neighboring gene STARR-positive B cell enhancer mm9_chrX:136990945-136991245 Neighboring gene STARR-seq mESC enhancer starr_48006 Neighboring gene phosphoribosyl pyrophosphate synthetase 1 Neighboring gene STARR-positive B cell enhancer mm9_chrX:137038534-137038835 Neighboring gene TSC22 domain family, member 3 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    139422314..139436409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003953088.2 RNA Sequence

    Related
    ENSMUST00000292437.1

  2. XR_878253.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials