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LOC104705917 trafficking protein particle complex subunit 8-like [ Camelina sativa (false flax) ]

Gene ID: 104705917, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104705917
Gene description
trafficking protein particle complex subunit 8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104705917 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 8 NC_025692.1 (3265973..3274662, complement)

Chromosome 8 - NC_025692.1Genomic Context describing neighboring genes Neighboring gene HIV Tat-specific factor 1-like Neighboring gene sister chromatid cohesion 1 protein 4-like Neighboring gene acetolactate synthase small subunit 1, chloroplastic-like Neighboring gene conserved oligomeric Golgi complex subunit 1-like Neighboring gene ubiquitin carboxyl-terminal hydrolase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025692.1 Chromosome 8 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Mudalkar S, et al. Plant Mol Biol, 2014 Jan. PMID 24002439
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPIII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025692.1 Reference Cs

    Range
    3265973..3274662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010422013.2 → XP_010420315.1  trafficking protein particle complex subunit 8-like isoform X1

    Conserved Domains (1) summary
    pfam12739
    Location:164 → 515
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

  2. XM_019228287.1 → XP_019083832.1  trafficking protein particle complex subunit 8-like isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases