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LOC104705916 sister chromatid cohesion 1 protein 4-like [ Camelina sativa (false flax) ]

Gene ID: 104705916, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104705916
Gene description
sister chromatid cohesion 1 protein 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104705916 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 8 NC_025692.1 (3258085..3265523)

Chromosome 8 - NC_025692.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104705913 Neighboring gene HIV Tat-specific factor 1-like Neighboring gene trafficking protein particle complex subunit 8-like Neighboring gene acetolactate synthase small subunit 1, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025692.1 Chromosome 8 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication-born double-strand break repair via sister chromatid exchange IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion 1 protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025692.1 Reference Cs

    Range
    3258085..3265523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010422012.2 → XP_010420314.1  sister chromatid cohesion 1 protein 4-like

    Conserved Domains (2) summary
    pfam04824
    Location:972 → 1026
    Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
    pfam04825
    Location:1 → 104
    Rad21_Rec8_N; N terminus of Rad21 / Rec8 like protein
Nucleotide Protein
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