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LOC104705915 HIV Tat-specific factor 1-like [ Camelina sativa (false flax) ]

Gene ID: 104705915, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104705915
Gene description
HIV Tat-specific factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104705915 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 8 NC_025692.1 (3245614..3257620)

Chromosome 8 - NC_025692.1Genomic Context describing neighboring genes Neighboring gene stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic-like Neighboring gene uncharacterized LOC104705913 Neighboring gene sister chromatid cohesion 1 protein 4-like Neighboring gene trafficking protein particle complex subunit 8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025692.1 Chromosome 8 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HIV Tat-specific factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025692.1 Reference Cs

    Range
    3245614..3257620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019228286.1 → XP_019083831.1  HIV Tat-specific factor 1-like

Nucleotide Protein
Heading Accession and Version

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