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TUB2 tubulin beta-9 chain [ Eucalyptus grandis ]

Gene ID: 104432674, updated on 7-Dec-2023

Summary

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Gene symbol
TUB2
Gene description
tubulin beta-9 chain
Locus tag
EUGRSUZ_B02285
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See TUB2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (38624984..38627143)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092439.1 (44004082..44006239)

Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene protein TOC75-3, chloroplastic-like Neighboring gene chromatin modification-related protein eaf-1-like Neighboring gene uncharacterized LOC104435305 Neighboring gene beta-glucosidase BoGH3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. beta-tubulin affects cellulose microfibril orientation in plant secondary fibre cell walls. Spokevicius AV, et al. Plant J, 2007 Aug. PMID 17605757
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin beta-9 chain
Names
beta-tubulin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302709.1 → NP_001289638.1  tubulin beta-9 chain

    See identical proteins and their annotated locations for NP_001289638.1

    Status: PROVISIONAL

    Source sequence(s)
    EF534220
    UniProtKB/TrEMBL
    A7KQH1, A7KQH2
    Conserved Domains (2) summary
    PLN00220
    Location:1 → 446
    PLN00220; tubulin beta chain; Provisional
    cd02187
    Location:2 → 426
    beta_tubulin; The beta-tubulin family

RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

    Range
    38624984..38627143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases