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Lhfpl3 LHFPL tetraspan subfamily member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 103692025, updated on 4-Jan-2025

Summary

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Official Symbol
Lhfpl3provided by RGD
Official Full Name
LHFPL tetraspan subfamily member 3provided by RGD
Primary source
RGD:1559727
See related
EnsemblRapid:ENSRNOG00000066703 AllianceGenome:RGD:1559727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559727
Summary
Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Brain (RPKM 66.7), Lung (RPKM 45.7) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Lhfpl3 in Genome Data Viewer
Location:
4q11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (12728532..13271439, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (11836200..12379126, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (8369553..8994881, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene zinc finger CCHC domain-containing protein 10-like Neighboring gene macrophage migration inhibitory factor like 1 Neighboring gene uncharacterized LOC134486548 Neighboring gene uncharacterized LOC134486547 Neighboring gene RNA, U2 small nuclear 12 Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LHFPL tetraspan subfamily member 3 protein
Names
lipoma HMGIC fusion partner-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401282.1 → NP_001388211.1  LHFPL tetraspan subfamily member 3 protein

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6ATK6
    Related
    ENSRNOP00000103667.1, ENSRNOT00000152722.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    12728532..13271439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108983.2 → XP_038964911.1  LHFPL tetraspan subfamily member 3 protein isoform X1

    Conserved Domains (1) summary
    pfam10242
    Location:33 → 238
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

  2. XM_039108985.2 → XP_038964913.1  LHFPL tetraspan subfamily member 3 protein isoform X2

    Related
    ENSRNOP00000096741.1, ENSRNOT00000094353.2
    Conserved Domains (1) summary
    pfam10242
    Location:33 → 238
    L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

  3. XM_017593101.3 → XP_017448590.1  LHFPL tetraspan subfamily member 3 protein isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials