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SMC1B structural maintenance of chromosomes 1B [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102937419, updated on 10-Mar-2024

Summary

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Gene symbol
SMC1B
Gene description
structural maintenance of chromosomes 1B
Locus tag
UY3_08845
See related
EnsemblRapid:ENSCMYG00015014149
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SMC1B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (224295411..224356281)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (224295622..224356167)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene fibulin 1 Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene family with sequence similarity 118 member A Neighboring gene uncharacterized LOC122464001 Neighboring gene uroplakin-2 Neighboring gene uroplakin 3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 1B
Names
Structural maintenance of chromosomes protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    224295411..224356281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043536831.1 → XP_043392766.1  structural maintenance of chromosomes protein 1B isoform X3

    Conserved Domains (1) summary
    pfam02463
    Location:3 → 1155
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_043536740.1 → XP_043392675.1  structural maintenance of chromosomes protein 1B isoform X1

    UniProtKB/TrEMBL
    M7B9Z2
    Conserved Domains (1) summary
    COG1196
    Location:3 → 1199
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_043536777.1 → XP_043392712.1  structural maintenance of chromosomes protein 1B isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:3 → 1196
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_043536904.1 → XP_043392839.1  structural maintenance of chromosomes protein 1B isoform X5

    Conserved Domains (1) summary
    COG1196
    Location:3 → 1066
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_043537021.1 → XP_043392956.1  structural maintenance of chromosomes protein 1B isoform X8

    Conserved Domains (1) summary
    pfam02463
    Location:3 → 985
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_043536864.1 → XP_043392799.1  structural maintenance of chromosomes protein 1B isoform X4

    Related
    ENSCMYP00015021935.1, ENSCMYT00015026542.1
    Conserved Domains (1) summary
    COG1196
    Location:3 → 1131
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_043536984.1 → XP_043392919.1  structural maintenance of chromosomes protein 1B isoform X7

    Conserved Domains (1) summary
    COG1196
    Location:3 → 998
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_043536937.1 → XP_043392872.1  structural maintenance of chromosomes protein 1B isoform X6

    Conserved Domains (1) summary
    COG1196
    Location:12 → 1006
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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