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SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102936281, updated on 10-Mar-2024

Summary

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Gene symbol
SCUBE1
Gene description
signal peptide, CUB domain and EGF like domain containing 1
Locus tag
UY3_08864
See related
EnsemblRapid:ENSCMYG00015014631
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SCUBE1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (226923079..227227209)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (227091492..227219982)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium binding domain 6 Neighboring gene metallophosphoesterase domain containing 1 Neighboring gene tubulin tyrosine ligase like 12 Neighboring gene translocator protein Neighboring gene malonyl-CoA-acyl carrier protein transacylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 1
Names
Signal peptide, CUB and EGF-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    226923079..227227209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043538048.1 → XP_043393983.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X3

    Conserved Domains (4) summary
    smart00179
    Location:362 → 392
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:840 → 951
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:310 → 359
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_007061754.4 → XP_007061816.3  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X1

    Related
    ENSCMYP00015022577.1, ENSCMYT00015027508.1
    Conserved Domains (4) summary
    smart00179
    Location:383 → 413
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:861 → 972
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:331 → 380
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_043538046.1 → XP_043393981.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X2

    Conserved Domains (4) summary
    smart00179
    Location:383 → 413
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:854 → 965
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:331 → 380
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_043538070.1 → XP_043394005.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X6

    Conserved Domains (4) summary
    smart00179
    Location:332 → 362
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:810 → 921
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:280 → 329
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_043538053.1 → XP_043393988.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X4

    Conserved Domains (4) summary
    smart00179
    Location:353 → 383
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:831 → 942
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:301 → 350
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_043538060.1 → XP_043393995.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X5

    Related
    ENSCMYP00015022584.1, ENSCMYT00015027517.1
    Conserved Domains (4) summary
    smart00179
    Location:353 → 383
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:824 → 935
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:301 → 350
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  7. XM_043538080.1 → XP_043394015.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X7

    Conserved Domains (4) summary
    smart00179
    Location:272 → 302
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:750 → 861
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:220 → 269
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  8. XM_043538091.1 → XP_043394026.1  signal peptide, CUB and EGF-like domain-containing protein 1 isoform X8

    Conserved Domains (4) summary
    smart00179
    Location:272 → 302
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:743 → 854
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07645
    Location:63 → 102
    EGF_CA; Calcium-binding EGF domain
    cl00057
    Location:220 → 269
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RNA

  1. XR_006287903.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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