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PARVB parvin beta [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102935086, updated on 10-Mar-2024

Summary

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Gene symbol
PARVB
Gene description
parvin beta
Locus tag
UY3_08859
See related
EnsemblRapid:ENSCMYG00015014502
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See PARVB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (226260315..226358073, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (226260315..226357710, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene shisa like 1 Neighboring gene uncharacterized LOC122464028 Neighboring gene parvin gamma Neighboring gene uncharacterized LOC119567705 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase Pnpla3 Neighboring gene SAMM50 sorting and assembly machinery component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-parvin
Names
Beta-parvin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    226260315..226358073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007061748.4 → XP_007061810.1  beta-parvin isoform X1

    Related
    ENSCMYP00015022369.1, ENSCMYT00015027248.1
    Conserved Domains (2) summary
    cd21336
    Location:89 → 194
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:236 → 365
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin

  2. XM_027824222.3 → XP_027680023.1  beta-parvin isoform X3

    Conserved Domains (2) summary
    cd21336
    Location:36 → 141
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:183 → 312
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin

  3. XM_037914708.2 → XP_037770636.1  beta-parvin isoform X2

    Conserved Domains (2) summary
    cd21336
    Location:51 → 156
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:198 → 327
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin

  4. XM_037914718.2 → XP_037770646.1  beta-parvin isoform X3

    Related
    ENSCMYP00015022362.1, ENSCMYT00015027237.1
    Conserved Domains (2) summary
    cd21336
    Location:36 → 141
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:183 → 312
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin

  5. XM_043537976.1 → XP_043393911.1  beta-parvin isoform X3

    Conserved Domains (2) summary
    cd21336
    Location:36 → 141
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:183 → 312
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin

  6. XM_037914733.2 → XP_037770661.1  beta-parvin isoform X3

    Conserved Domains (2) summary
    cd21336
    Location:36 → 141
    CH_PARVB_rpt1; first calponin homology (CH) domain found in beta-parvin
    cd21338
    Location:183 → 312
    CH_PARVB_rpt2; second calponin homology (CH) domain found in beta-parvin
Nucleotide Protein
Heading Accession and Version

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