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Gm29538 predicted gene 29538 [ Mus musculus (house mouse) ]

Gene ID: 102636980, updated on 22-Oct-2024

Summary

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Official Symbol
Gm29538provided by MGI
Official Full Name
predicted gene 29538provided by MGI
Primary source
MGI:MGI:5580244
See related
Ensembl:ENSMUSG00000099553 AllianceGenome:MGI:5580244
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in lung adult (RPKM 2.1), ovary adult (RPKM 1.5) and 4 other tissues See more
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Genomic context

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See Gm29538 in Genome Data Viewer
Location:
1 D; 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (88371691..88390341, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (88443969..88462619, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily M, member 8 Neighboring gene STARR-seq mESC enhancer starr_01631 Neighboring gene secreted phosphoprotein 2 Neighboring gene STARR-seq mESC enhancer starr_01632 Neighboring gene STARR-seq mESC enhancer starr_01633 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:90371230-90371404 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:90372096-90372342 Neighboring gene predicted gene 28888 Neighboring gene glutamine repeat protein 1 Neighboring gene predicted gene, 19589

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166083.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102505
    Related
    ENSMUST00000355121.1

  2. NR_166084.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102505
    Related
    ENSMUST00000190783.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    88371691..88390341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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