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Gm13609 predicted gene 13609 [ Mus musculus (house mouse) ]

Gene ID: 102636087, updated on 22-Oct-2024

Summary

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Official Symbol
Gm13609provided by MGI
Official Full Name
predicted gene 13609provided by MGI
Primary source
MGI:MGI:3651299
See related
Ensembl:ENSMUSG00000086192 AllianceGenome:MGI:3651299
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in testis adult (RPKM 12.1), lung adult (RPKM 3.7) and 26 other tissues See more
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Genomic context

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See Gm13609 in Genome Data Viewer
Location:
2 B; 2 21.99 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (31906925..31907363, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32016913..32017351, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene allograft inflammatory factor 1-like Neighboring gene nucleoporin 214 Neighboring gene BTG3 associated nuclear protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_04165 Neighboring gene STARR-seq mESC enhancer starr_04166 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31889766-31889967 Neighboring gene family with sequence similarity 78, member A Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31912916-31913099 Neighboring gene microRNA 7674 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31917796-31918029 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31918647-31918863 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31920488-31920689 Neighboring gene STARR-seq mESC enhancer starr_04167 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31934202-31934355 Neighboring gene STARR-positive B cell enhancer mm9_chr2:31936748-31937048 Neighboring gene predicted gene, 33126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166199.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928893
    Related
    ENSMUST00000257492.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    31906925..31907363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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