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Gm38477 predicted gene, 38477 [ Mus musculus (house mouse) ]

Gene ID: 102635349, updated on 22-Oct-2024

Summary

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Official Symbol
Gm38477provided by MGI
Official Full Name
predicted gene, 38477provided by MGI
Primary source
MGI:MGI:5621362
See related
Ensembl:ENSMUSG00000116555 AllianceGenome:MGI:5621362
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 1.8) See more
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Genomic context

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See Gm38477 in Genome Data Viewer
Location:
16 C3.3; 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (86797859..86846171, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (87001024..87049283, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32461 Neighboring gene predicted gene, 32624 Neighboring gene predicted gene, 25715 Neighboring gene predicted gene, 32865 Neighboring gene STARR-seq mESC enhancer starr_41394 Neighboring gene predicted gene, 41484

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    86797859..86846171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_876202.3 RNA Sequence

    Related
    ENSMUST00000340307.1

  2. XR_876201.3 RNA Sequence

  3. XR_876204.1 RNA Sequence

  4. XR_385015.1 RNA Sequence

    Related
    ENSMUST00000340319.1
Nucleotide Protein Strain
Heading Accession and Version

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