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Gm31501 predicted gene, 31501 [ Mus musculus (house mouse) ]

Gene ID: 102633749, updated on 2-Nov-2024

Summary

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Official Symbol
Gm31501provided by MGI
Official Full Name
predicted gene, 31501provided by MGI
Primary source
MGI:MGI:5590660
See related
AllianceGenome:MGI:5590660
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc; linc-3c
Summary
Is expressed in retina layer. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm31501 in Genome Data Viewer
Location:
18 B3; 18
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42582350..42594177)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42449285..42456575)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31438 Neighboring gene STARR-seq mESC enhancer starr_44440 Neighboring gene ribosomal protein L21 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44441 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:42670844-42671027 Neighboring gene transcription elongation regulator 1 (CA150) Neighboring gene STARR-seq mESC enhancer starr_44443 Neighboring gene STARR-positive B cell enhancer mm9_chr18:42717560-42717861 Neighboring gene STARR-positive B cell enhancer ABC_E400

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Insight into Nephrocan Function in Mouse Endoderm Patterning. Addeo M, et al. Int J Mol Sci, 2019 Dec 18. PMID 31861348, Free PMC Article
  2. Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing. Wan Y, et al. BMC Genomics, 2019 Jul 8. PMID 31286854, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    42582350..42594177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_386194.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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