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VDAC mitochondrial outer membrane protein porin of 36 kDa-like [ Solanum tuberosum (potato) ]

Gene ID: 102603136, updated on 2-Nov-2023

Summary

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Gene symbol
VDAC
Gene description
mitochondrial outer membrane protein porin of 36 kDa-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See VDAC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239388.1 (27825..31815, complement)

NW_006239388.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At5g15080 Neighboring gene hypersensitive-induced response protein 1-like Neighboring gene protein Mpv17-like Neighboring gene transcription initiation factor TFIID subunit 4b-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239388.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional characterization of Solanum tuberosum VDAC36. Lopes-Rodrigues M, et al. Proteins, 2020 Jun. PMID 31833115
  2. Molecular basis for the differential interaction of plant mitochondrial VDAC proteins with tRNAs. Salinas T, et al. Nucleic Acids Res, 2014 Sep. PMID 25114051, Free PMC Article
  3. Biochemical, molecular, and functional characterization of porin isoforms from potato mitochondria. Heins L, et al. J Biol Chem, 1994 Oct 21. PMID 7929361
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated monoatomic anion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic anion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial outer membrane protein porin of 36 kDa
Names
36kDA porin II
36kDa porin I
Mitochondrial outer membrane protein porin of 36 kDa
POM 36
Voltage-dependent anion-selective channel protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288205.1 → NP_001275134.1  mitochondrial outer membrane protein porin of 36 kDa

    See identical proteins and their annotated locations for NP_001275134.1

    Status: PROVISIONAL

    Source sequence(s)
    X80387
    UniProtKB/Swiss-Prot
    P42056
    Conserved Domains (1) summary
    pfam01459
    Location:4 → 269
    Porin_3; Eukaryotic porin

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239388.1 Reference SolTub_3.0 Primary Assembly

    Range
    27825..31815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42056.2 GenPept UniProtKB/Swiss-Prot:P42056

Gene LinkOut

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Molecular Biology Databases