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CDPK2 calcium-dependent protein kinase 2 [ Solanum tuberosum (potato) ]

Gene ID: 102577877, updated on 18-Sep-2024

Summary

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Gene symbol
CDPK2
Gene description
calcium-dependent protein kinase 2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See CDPK2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239000.1 (1899402..1905360, complement)

NW_006239000.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g28010 Neighboring gene protein translation factor SUI1 homolog Neighboring gene reactive Intermediate Deaminase A, chloroplastic-like Neighboring gene ubiquitin thioesterase OTU1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239000.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. StCDPK2 expression and activity reveal a highly responsive potato calcium-dependent protein kinase involved in light signalling. Giammaria V, et al. Planta, 2011 Mar. PMID 21132327
  2. Jasmonic acid affects plant morphology and calcium-dependent protein kinase expression and activity in Solanum tuberosum. Ulloa RM, et al. Physiol Plant, 2002 Jul. PMID 12081535
  3. Regulation of CDPK isoforms during tuber development. Raíces M, et al. Plant Mol Biol, 2003 Jul. PMID 14558661
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-dependent protein kinase 2
NP_001275371.1
XP_006346214.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288442.1 → NP_001275371.1  calcium-dependent protein kinase 2

    See identical proteins and their annotated locations for NP_001275371.1

    Status: PROVISIONAL

    Source sequence(s)
    AF418563
    UniProtKB/TrEMBL
    A0A6H0D9M2, Q944W9
    Conserved Domains (4) summary
    PTZ00184
    Location:367 → 512
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:454 → 511
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd05117
    Location:72 → 330
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    pfam00069
    Location:73 → 331
    Pkinase; Protein kinase domain

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239000.1 Reference SolTub_3.0 Primary Assembly

    Range
    1899402..1905360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006346152.2 → XP_006346214.1  calcium-dependent protein kinase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6H0D9M2, M1C159
    Conserved Domains (4) summary
    PTZ00184
    Location:367 → 512
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:379 → 438
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd05117
    Location:72 → 330
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    pfam00069
    Location:73 → 331
    Pkinase; Protein kinase domain
Nucleotide Protein
Heading Accession and Version

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