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FUL1 Agamous-like MADS-box protein AGL8 homolog [ Solanum tuberosum (potato) ]

Gene ID: 102577795, updated on 2-Nov-2023

Summary

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Gene symbol
FUL1
Gene description
Agamous-like MADS-box protein AGL8 homolog
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
POTM1-1; POTM1-2
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Genomic context

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See FUL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239107.1 (278916..286037, complement)

NW_006239107.1Genomic Context describing neighboring genes Neighboring gene ADP,ATP carrier protein ER-ANT1 Neighboring gene uncharacterized LOC102603306 Neighboring gene uncharacterized LOC107061948 Neighboring gene uncharacterized LOC102603976

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239107.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel MADS-box gene of potato (Solanum tuberosum L.) expressed during the early stages of tuberization. Kang SG, et al. Plant Mol Biol, 1996 May. PMID 8756601
  2. Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Kang SG, et al. Gene, 1995 Dec 12. PMID 8543185
  3. Evolution and Diversification of FRUITFULL Genes in Solanaceae. Maheepala DC, et al. Front Plant Sci, 2019. PMID 30846991, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL8 homolog
Names
transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288213.1 → NP_001275142.1  agamous-like MADS-box protein AGL8 homolog

    See identical proteins and their annotated locations for NP_001275142.1

    Status: PROVISIONAL

    Source sequence(s)
    U23758
    UniProtKB/Swiss-Prot
    Q42429
    UniProtKB/TrEMBL
    M0ZY32
    Conserved Domains (2) summary
    cd00265
    Location:2 → 74
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:83 → 173
    K-box; K-box region

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239107.1 Reference SolTub_3.0 Primary Assembly

    Range
    278916..286037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q42429.1 GenPept UniProtKB/Swiss-Prot:Q42429

Gene LinkOut

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Molecular Biology Databases