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POPA Suberization-associated anionic peroxidase [ Solanum tuberosum (potato) ]

Gene ID: 102577694, updated on 2-Nov-2023

Summary

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Gene symbol
POPA
Gene description
Suberization-associated anionic peroxidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
POX; peroxidase
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Genomic context

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See POPA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239015.1 (1657315..1660547, complement)

NW_006239015.1Genomic Context describing neighboring genes Neighboring gene tetrahydrocannabinolic acid synthase-like Neighboring gene shikimate O-hydroxycinnamoyltransferase-like Neighboring gene suberization-associated anionic peroxidase 2-like Neighboring gene calcium-binding protein KIC-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239015.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [RNA-silencing of anionic peroxidase gene decreases the potato plant resistance to Phytophthora infestans (Mont.) de Bary]. Sorokan' AV, et al. Mol Biol (Mosk), 2014 Sep-Oct. PMID 25842867
  2. Cloning and sequencing of cDNA for a highly anionic peroxidase from potato and the induction of its mRNA in suberizing potato tubers and tomato fruits. Roberts E, et al. Plant Mol Biol, 1988 Jan. PMID 24272154
  3. Release of apical dominance in potato tuber is accompanied by programmed cell death in the apical bud meristem. Teper-Bamnolker P, et al. Plant Physiol, 2012 Apr. PMID 22362870, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An importance of anionic isoperoxidase M21334 in defense reaction against late blight in potato.
    Title: [RNA-silencing of anionic peroxidase gene decreases the potato plant resistance to Phytophthora infestans (Mont.) de Bary].
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suberization-associated anionic peroxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239015.1 Reference SolTub_3.0 Primary Assembly

    Range
    1657315..1660547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006347106.2 → XP_006347168.1  suberization-associated anionic peroxidase

    UniProtKB/Swiss-Prot
    P12437
    UniProtKB/TrEMBL
    M1C184
    Conserved Domains (1) summary
    cd00693
    Location:80 → 355
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P12437.2 GenPept UniProtKB/Swiss-Prot:P12437

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