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PATB1 Patatin-B1 [ Solanum tuberosum (potato) ]

Gene ID: 102577633, updated on 22-May-2022

Summary

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Gene symbol
PATB1
Gene description
Patatin-B1
Gene type
unknown
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
pat2; PATB2; PGM01; pat2-k2; pat2-k3; pat2-k4; Patatin-06; Patatin-10; Patatin-14; Patatin-15; Patatin-B2
Annotation information
Annotation category: partial on reference assembly

Genomic context

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See PATB1 in Genome Data Viewer
Location:
chromosome: Un
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239698.1 (17226..20773, complement)

NW_006239698.1Genomic Context describing neighboring genes Neighboring gene probable inactive patatin-3-Kuras 1 Neighboring gene uncharacterized LOC107059046 Neighboring gene uncharacterized LOC107059043

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239698.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and analysis of four potato tuber mRNAs. Stiekema WJ, et al. Plant Mol Biol, 1988 May. PMID 24272339
  2. Isolation and sequence analysis of cDNAs for the major potato tuber protein, patatin. Mignery GA, et al. Nucleic Acids Res, 1984 Nov 12. PMID 6150463, Free PMC Article
  3. Covalent structures of potato tuber lipases (patatins) and implications for vacuolar import. Welinder KG, et al. J Biol Chem, 2009 Apr 10. PMID 19211558, Free PMC Article
  4. Patatins, Kunitz protease inhibitors and other major proteins in tuber of potato cv. Kuras. Bauw G, et al. FEBS J, 2006 Aug. PMID 16884497
  5. Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development. Stupar RM, et al. Genetics, 2006 Feb. PMID 16322504, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • Patatin class I
  • Patatin group M-1
  • Patatin group M-2
  • Patatin group M-3
  • Patatin-04/09
  • Patatin-2-Kuras 2
  • Patatin-2-Kuras 3
  • Patatin-2-Kuras 4
  • patatin group J
  • patatin group M
  • patatin protein 04
  • patatin protein 06
  • patatin protein 09
  • patatin protein 10
  • patatin protein 14
  • patatin protein 15
  • patatin protein group M-1
  • patatin protein group M-2
  • patatin protein group M-3

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239698.1 Reference SolTub_3.0 Primary Assembly

    Range
    17226..20773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)