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RROP1 ATP-diphosphohydrolase [ Solanum tuberosum (potato) ]

Gene ID: 102577614, updated on 2-Nov-2023

Summary

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Gene symbol
RROP1
Gene description
ATP-diphosphohydrolase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
ADPase; Apyrase
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Genomic context

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See RROP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239038.1 (1248776..1254753)

NW_006239038.1Genomic Context describing neighboring genes Neighboring gene apyrase-like Neighboring gene uncharacterized LOC102579760 Neighboring gene histidine protein methyltransferase 1 homolog Neighboring gene heat stress transcription factor A-5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239038.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Partial purification and immunohistochemical localization of ATP diphosphohydrolase from Schistosoma mansoni. Immunological cross-reactivities with potato apyrase and Toxoplasma gondii nucleoside triphosphate hydrolase. Vasconcelos EG, et al. J Biol Chem, 1996 Sep 6. PMID 8703025
  2. Purification and cloning of a soluble ATP-diphosphohydrolase (apyrase) from potato tubers (Solanum tuberosum). Handa M, et al. Biochem Biophys Res Commun, 1996 Jan 26. PMID 8579614
  3. The potato-specific apyrase is apoplastically localized and has influence on gene expression, growth, and development. Riewe D, et al. Plant Physiol, 2008 Jul. PMID 18480378, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside diphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleoside diphosphate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apyrase
Names
ATP-diphosphatase
Adenosine diphosphatase
apyrase 3
putative apyrase AP5
NP_001275348.1
XP_015165203.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288419.1 → NP_001275348.1  apyrase precursor

    See identical proteins and their annotated locations for NP_001275348.1

    Status: PROVISIONAL

    Source sequence(s)
    EU125183
    UniProtKB/Swiss-Prot
    P80595, Q43164
    UniProtKB/TrEMBL
    A8CWX0, F2W401
    Conserved Domains (1) summary
    cl17037
    Location:37 → 454
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239038.1 Reference SolTub_3.0 Primary Assembly

    Range
    1248776..1254753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015309717.1 → XP_015165203.1  apyrase isoform X1

    UniProtKB/TrEMBL
    F2W401
    Conserved Domains (1) summary
    cl17037
    Location:37 → 454
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P80595.2 GenPept UniProtKB/Swiss-Prot:P80595

Gene LinkOut

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Molecular Biology Databases